{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "#input='/home/xiaoyifu/data/HG002/R9.4/demo/ex_1.tsv'\n",
    "input='/home/xiaoyifu/hg002.correct.tombo.train.100.tsv'#chm13.basecall.test.1w.tsv\n",
    "with open(input,'r') as rb:\n",
    "    for line in rb:\n",
    "        words=line.strip().split('\\t')\n",
    "        seq=words[3]\n",
    "        sig=words[4].split(';')\n",
    "        pred_pos=words[5].split(',')\n",
    "        pred_dorado=words[6].split(',')\n",
    "        pred_deepsignal=words[7].split(',')\n",
    "        pred_mean=words[8].split(',')\n",
    "        pred_label=words[9].split(',')\n",
    "        mapq=words[10].split(',')\n",
    "        if len(seq)==len(sig):\n",
    "            continue\n",
    "        print(words[0])\n",
    "        print(words[1])\n",
    "        print(words[2])\n",
    "        print('seq length: {}'.format(len(seq)))\n",
    "        print('signal group length: {}'.format(len(sig)))\n",
    "        print(seq)\n",
    "        print(sig)\n",
    "        #print(seq[:30])\n",
    "        #print(';'.join(sig[:30]))\n",
    "        #print(','.join(pred_pos[:3]))\n",
    "        #print(','.join(pred_dorado[:3]))\n",
    "        #print(','.join(pred_deepsignal[:3]))\n",
    "        #print(','.join(pred_mean[:3]))\n",
    "        #print(','.join(pred_label[:3]))\n",
    "        print(mapq[0])\n",
    "        #break"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [],
   "source": [
    "input='/home/xiaoyifu/data/HG002/R9.4/demo/ex_1.tsv'\n",
    "import numpy as np\n",
    "with open(input,'r') as rb:\n",
    "    for line in rb:\n",
    "        words=line.strip().split('\\t')\n",
    "        seq=words[3]\n",
    "        signal_group=[]\n",
    "        for sig in words[4].split(\";\"):\n",
    "            signal_group.append(np.array(sig))\n",
    "        pred_pos=words[5].split(',')\n",
    "        pred_dorado=words[6].split(',')\n",
    "        pred_deepsignal=words[7].split(',')\n",
    "        pred_mean=words[8].split(',')\n",
    "        pred_label=words[9].split(',')\n",
    "        mapq=words[10].split(',')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
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       " array('0.115037,0.775548,1.133324,0.940675,0.940675,0.995718,0.362729,0.527856,0.445292,0.252643',\n",
       "       dtype='<U89'),\n",
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       " array('1.325973,1.408537,1.215888,1.133324,0.004952,-0.077612,0.004952,0.252643,0.17008,-0.352824',\n",
       "       dtype='<U90'),\n",
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       " array('-2.692132,-2.224271,-2.527004,-2.444441,-2.471962,0.307686,0.417771,0.472814,0.555377,0.280165',\n",
       "       dtype='<U94'),\n",
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       "       dtype='<U89'),\n",
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       "       dtype='<U86'),\n",
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       "       dtype='<U88'),\n",
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       "       dtype='<U86'),\n",
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       "       dtype='<U91'),\n",
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       "       dtype='<U131'),\n",
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       "       dtype='<U87'),\n",
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       "       dtype='<U292'),\n",
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       "       dtype='<U93'),\n",
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       "       dtype='<U86'),\n",
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       "       dtype='<U91'),\n",
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       " array('0.692984,0.61042,0.637941,0.720505,0.720505,0.803069,1.243409,1.931441,2.069047,1.738792',\n",
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       "       dtype='<U86'),\n",
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       "       dtype='<U89'),\n",
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       "       dtype='<U89'),\n",
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       "       dtype='<U92'),\n",
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       "       dtype='<U90'),\n",
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       " array('0.748026,1.188366,1.766313,1.463579,1.381015,1.243409,1.243409,1.215888,0.885633,-0.380346',\n",
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       " array('1.188366,1.215888,1.133324,0.995718,0.940675,0.720505,-0.160176,-0.490431,-0.600516,-0.380346',\n",
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       " array('1.023239,-0.325303,-0.517952,-0.435388,-0.435388,-0.160176,-0.517952,-0.490431,-0.325303,-0.517952',\n",
       "       dtype='<U98'),\n",
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       "       dtype='<U91'),\n",
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       "       dtype='<U94'),\n",
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       "       dtype='<U87'),\n",
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       "       dtype='<U98'),\n",
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       "       dtype='<U99'),\n",
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       "       dtype='<U92'),\n",
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       "       dtype='<U90'),\n",
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       "       dtype='<U91'),\n",
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       "       dtype='<U98'),\n",
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       "       dtype='<U99'),\n",
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       "       dtype='<U97'),\n",
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       "       dtype='<U99'),\n",
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       " array('0.004952,-0.05009,0.004952,-0.325303,-0.958292,-0.985814,-1.013335,-1.591281,-1.78393,-1.756409',\n",
       "       dtype='<U95'),\n",
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       "       dtype='<U91'),\n",
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       "       dtype='<U99'),\n",
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       "       dtype='<U89'),\n",
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       " array('-0.435388,1.463579,1.876398,1.683749,1.353494,0.692984,0.115037,0.225122,0.225122,0.307686',\n",
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       "       dtype='<U94'),\n",
       " array('1.243409,1.298452,1.27093,0.858111,-0.545473,-0.462909,-0.462909,-0.490431,-0.545473,-0.517952',\n",
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       "       dtype='<U95'),\n",
       " array('-0.848207,-0.90325,-0.765643,-0.985814,-0.655558,0.252643,1.105803,1.105803,1.160845,0.775548',\n",
       "       dtype='<U93'),\n",
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       " array('0.83059,0.940675,0.995718,0.940675,0.803069,0.225122,-0.710601,-1.068377,-1.095899,-1.426154',\n",
       "       dtype='<U92'),\n",
       " array('-1.536239,-1.618803,-1.508718,-1.536239,-1.508718,0.61042,0.995718,1.105803,1.243409,1.215888',\n",
       "       dtype='<U93'),\n",
       " array('1.023239,0.940675,0.803069,0.968196,0.803069', dtype='<U44'),\n",
       " array('1.215888,0.692984,-0.435388,-0.68308,-0.848207', dtype='<U46'),\n",
       " array('-0.820686,-1.013335,-0.710601,-1.068377,-1.591281,-1.976579,-1.728888,-1.949058,-1.78393,-0.215218',\n",
       "       dtype='<U98'),\n",
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       " array('0.665462,0.665462,0.472814,0.555377,-0.05009', dtype='<U44'),\n",
       " array('0.087516,-0.132654,0.087516,0.225122,0.115037,0.252643,0.225122,0.115037,-0.765643,-0.655558',\n",
       "       dtype='<U92'),\n",
       " array('-0.655558,-0.765643,-0.765643,0.748026,1.105803', dtype='<U47'),\n",
       " array('0.527856,-0.022569,0.004952,-0.05009,0.17008', dtype='<U44'),\n",
       " array('-0.215218,0.335207,0.858111,0.775548,0.803069', dtype='<U45'),\n",
       " array('0.637941,0.775548,0.720505,0.637941,0.858111,0.775548,0.637941,0.582899,0.775548,0.637941',\n",
       "       dtype='<U89'),\n",
       " array('0.555377,0.225122,0.527856,0.335207,0.445292,0.307686,0.362729,0.087516,0.142558,0.115037',\n",
       "       dtype='<U89'),\n",
       " array('0.445292,1.05076,0.995718,0.775548,0.61042', dtype='<U42'),\n",
       " array('0.142558,0.115037,-0.297782,-0.325303,-0.517952,0.032473,-0.407867,0.472814,1.105803,0.940675',\n",
       "       dtype='<U93'),\n",
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       " array('-0.710601,-0.710601,-0.820686,-0.820686,-0.958292,-1.205984,-1.040856,-0.90325,-1.013335,-1.150941,-1.013335,-1.095899,-1.178462,-1.261026,-1.316069',\n",
       "       dtype='<U148'),\n",
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       " array('2.151611,1.903919,1.931441,2.12409,1.986483', dtype='<U43'),\n",
       " array('1.160845,0.885633,0.803069,0.858111,0.720505,0.885633,0.748026,0.858111,0.692984,0.83059',\n",
       "       dtype='<U88'),\n",
       " array('0.885633,0.665462,0.913154,1.023239,0.885633,1.05076,1.133324,0.858111,0.995718,0.83059',\n",
       "       dtype='<U87'),\n",
       " array('1.133324,1.05076,1.023239,1.215888,0.940675,0.885633,0.83059,0.858111,0.803069,0.280165',\n",
       "       dtype='<U87'),\n",
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       "       dtype='<U144'),\n",
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       " array('0.115037,0.885633,0.445292,0.362729,0.61042,1.05076,1.05076,1.601185,1.601185,0.803069',\n",
       "       dtype='<U86'),\n",
       " array('0.692984,0.720505,0.637941,0.500335,0.775548,0.775548,0.858111,0.445292,0.004952,0.225122',\n",
       "       dtype='<U89'),\n",
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       " array('-0.077612,-0.05009,1.160845,1.188366,1.215888', dtype='<U45'),\n",
       " array('0.995718,1.160845,0.940675,1.05076,1.078281', dtype='<U43'),\n",
       " array('0.940675,0.83059,1.105803,0.968196,0.83059', dtype='<U42'),\n",
       " array('0.83059,0.665462,0.748026,0.748026,0.61042,0.39025,0.445292,0.61042,0.527856,0.775548,0.445292,0.775548,0.61042,0.968196,0.500335,0.665462,0.775548,0.555377,0.775548,0.803069,0.527856,0.17008,-0.270261,-0.517952,-0.655558,-0.738122,-0.380346,-0.517952,-0.628037,-0.380346,-0.105133,-0.462909,-1.013335,-0.958292,-0.820686',\n",
       "       dtype='<U321'),\n",
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       " array('-1.371111,-0.985814,-1.205984,-1.150941,-1.205984,-1.205984,-1.426154,-1.205984,-1.426154,-1.316069',\n",
       "       dtype='<U99'),\n",
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       " array('-1.838973,-1.756409,-1.728888,-1.756409,-1.701366,-1.591281,-1.728888,-1.673845,-1.646324,-1.426154,-1.481196,-1.756409,-1.591281,-1.12342,-0.820686',\n",
       "       dtype='<U148'),\n",
       " array('-0.958292,-1.205984,-1.095899,-0.985814,-1.068377,-0.930771,-0.930771,-0.90325,-0.187697,0.445292',\n",
       "       dtype='<U97'),\n",
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       " array('0.885633,0.968196,0.83059,1.05076,0.995718', dtype='<U42'),\n",
       " array('0.885633,-0.490431,-0.215218,-0.325303,-0.517952,-0.407867,-0.572995,-0.270261,-0.435388,-0.435388',\n",
       "       dtype='<U98'),\n",
       " array('-0.105133,-0.435388,-0.517952,-0.710601,-0.68308,-0.793165,-0.848207,-1.205984,-1.591281,-1.646324',\n",
       "       dtype='<U98'),\n",
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       " array('-1.618803,-1.426154,-0.930771,1.160845,0.940675', dtype='<U47'),\n",
       " array('1.160845,1.215888,1.05076,1.215888,1.188366,1.05076,1.023239,1.133324,0.995718,1.078281,0.995718,0.940675,1.215888,1.160845,0.940675,1.078281,1.215888,0.940675,0.885633,0.858111',\n",
       "       dtype='<U177'),\n",
       " array('1.160845,1.05076,0.858111,0.913154,0.83059,0.885633,0.115037,-0.242739,0.004952,0.142558',\n",
       "       dtype='<U88'),\n",
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       " array('-1.095899,-0.90325,-0.930771,-0.765643,-1.618803,-1.673845,-1.536239,-1.426154,-1.618803,-1.56376',\n",
       "       dtype='<U97'),\n",
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       " array('-1.150941,-1.013335,-0.875728,-1.205984,-1.288547,-1.205984,-1.233505,-1.205984,-1.095899,-1.013335',\n",
       "       dtype='<U99'),\n",
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       "       dtype='<U444'),\n",
       " array('-1.205984,-0.985814,-0.435388,-0.462909,-0.132654', dtype='<U49'),\n",
       " array('1.215888,0.885633,1.105803,0.995718,0.968196,1.546143,1.188366,0.940675,0.39025,-0.105133',\n",
       "       dtype='<U89'),\n",
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       "       dtype='<U296'),\n",
       " array('-0.848207,-0.710601,-0.875728,-1.040856,-1.068377,-0.958292,-0.90325,-1.068377,-0.985814,-0.517952',\n",
       "       dtype='<U98'),\n",
       " array('-0.517952,-0.380346,-0.242739,-0.297782,-0.380346,-0.077612,-0.132654,-0.380346,0.885633,0.775548',\n",
       "       dtype='<U97'),\n",
       " array('0.555377,0.803069,0.940675,0.665462,0.858111', dtype='<U44'),\n",
       " array('0.858111,0.582899,0.748026,0.913154,0.335207,0.61042,0.692984,0.527856,0.61042,0.995718,0.720505,0.858111,0.61042,0.775548,0.885633,0.858111,1.215888,1.27093,1.408537,1.628707',\n",
       "       dtype='<U175'),\n",
       " array('1.381015,1.325973,0.803069,0.280165,0.197601,0.142558,0.087516,0.059995,0.059995,-0.105133',\n",
       "       dtype='<U90'),\n",
       " array('0.059995,-0.352824,-0.710601,-0.710601,-0.793165,-0.90325,-0.710601,-0.435388,-0.490431,-0.462909',\n",
       "       dtype='<U97'),\n",
       " array('-0.517952,-0.517952,-0.297782,-0.380346,1.27093,1.188366,1.436058,1.215888,1.408537,1.518622',\n",
       "       dtype='<U92'),\n",
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       " array('1.436058,1.381015,1.298452,1.325973,1.325973,1.188366,1.298452,1.27093,0.968196,1.023239',\n",
       "       dtype='<U88'),\n",
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       " array('-1.178462,-1.205984,-1.426154,-1.756409,-1.536239', dtype='<U49'),\n",
       " array('-1.371111,-1.728888,-1.811452,-1.398633,-1.316069', dtype='<U49'),\n",
       " array('-1.371111,-1.150941,-1.205984,-1.481196,-1.536239', dtype='<U49'),\n",
       " array('-1.646324,-1.040856,-0.572995,-0.628037,-0.655558', dtype='<U49'),\n",
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       " array('0.775548,0.968196,1.05076,0.995718,1.133324,0.913154,1.05076,0.748026,-0.077612,-0.738122',\n",
       "       dtype='<U89'),\n",
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       "       dtype='<U99'),\n",
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       " array('-0.765643,-0.875728,-0.490431,-0.985814,-1.150941,-0.765643,-0.875728,-0.875728,-0.765643,-0.793165',\n",
       "       dtype='<U99'),\n",
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       "       dtype='<U99'),\n",
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       " array('-1.894015,-0.710601,0.500335,0.692984,1.105803', dtype='<U46'),\n",
       " array('1.05076,1.105803,1.05076,0.995718,0.885633', dtype='<U42'),\n",
       " array('0.858111,1.215888,0.775548,0.555377,-0.077612,-0.105133,0.665462,0.472814,0.61042,0.692984',\n",
       "       dtype='<U90'),\n",
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       " array('-1.040856,-1.12342,-0.930771,-1.095899,-1.288547,-1.205984,-1.068377,-1.205984,-1.233505,-1.316069',\n",
       "       dtype='<U98'),\n",
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       "       dtype='<U247'),\n",
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       " array('-0.242739,-0.352824,-0.380346,-0.380346,-0.68308,-0.325303,-0.820686,-0.848207,-0.90325,-0.958292',\n",
       "       dtype='<U97'),\n",
       " array('-0.958292,-0.930771,-1.261026,-1.56376,-1.233505,-0.435388,-0.710601,-0.490431,-0.793165,-0.545473',\n",
       "       dtype='<U98'),\n",
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       " array('1.325973,1.381015,1.436058,1.188366,0.995718', dtype='<U44'),\n",
       " array('0.995718,0.803069,0.445292,0.115037,0.004952', dtype='<U44'),\n",
       " array('0.142558,-0.132654,0.225122,0.004952,0.115037,0.004952,0.17008,-0.462909,-0.490431,-0.572995',\n",
       "       dtype='<U92'),\n",
       " array('-0.490431,-0.600516,-0.572995,-0.545473,-0.545473,-0.517952,-0.270261,-0.572995,-0.628037,-0.490431',\n",
       "       dtype='<U99'),\n",
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       "       dtype='<U98'),\n",
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       " array('1.766313,2.646994,2.56443,2.56443,2.069047', dtype='<U42'),\n",
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       " array('0.087516,-0.022569,0.252643,-0.05009,0.142558,-0.215218,0.004952,0.142558,0.61042,0.252643',\n",
       "       dtype='<U90'),\n",
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       " array('-0.160176,-0.325303,0.280165,1.463579,1.353494', dtype='<U46'),\n",
       " array('1.546143,1.436058,0.775548,0.665462,0.637941,0.665462,0.61042,0.720505,0.803069,0.720505',\n",
       "       dtype='<U88'),\n",
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       "       dtype='<U460'),\n",
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       "       dtype='<U143'),\n",
       " array('-1.398633,-1.371111,-1.288547,-1.34359,-1.316069,-1.481196,-1.34359,-1.371111,-1.453675,-1.233505,-1.316069,-1.12342,-1.288547,-1.426154,-1.316069,-1.12342,-1.261026,-1.261026,-1.178462,-1.426154,-1.536239,-1.261026,-1.426154,-1.261026,-1.205984,-0.985814,-1.233505,-0.90325,-0.05009,-0.022569',\n",
       "       dtype='<U293'),\n",
       " array('-0.05009,-0.077612,0.335207,0.692984,0.445292,0.995718,0.995718,0.913154,1.078281,0.858111,1.105803,1.05076,1.436058,1.711271,1.408537',\n",
       "       dtype='<U134'),\n",
       " array('1.215888,0.500335,0.445292,0.940675,1.738792', dtype='<U44'),\n",
       " array('1.546143,1.766313,1.738792,1.325973,1.903919,1.738792,1.628707,1.436058,0.61042,0.39025,0.197601,0.225122,0.032473,0.087516,0.032473,0.115037,-0.105133,0.087516,-0.105133,-0.132654',\n",
       "       dtype='<U180'),\n",
       " array('-0.187697,-0.325303,0.004952,-0.242739,0.004952,-0.160176,-0.242739,-0.215218,-0.325303,-0.187697',\n",
       "       dtype='<U97'),\n",
       " array('-0.05009,-0.325303,0.087516,0.032473,1.793834', dtype='<U45'),\n",
       " array('1.903919,1.27093,1.05076,0.913154,1.105803,0.968196,0.885633,0.995718,0.775548,0.775548',\n",
       "       dtype='<U87'),\n",
       " array('0.720505,0.803069,0.83059,0.885633,0.803069', dtype='<U43'),\n",
       " array('0.995718,0.775548,1.05076,0.995718,0.775548,0.940675,0.913154,0.885633,0.692984,0.692984',\n",
       "       dtype='<U88'),\n",
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       " array('1.408537,0.720505,0.720505,0.968196,0.61042,0.61042,0.692984,0.665462,0.335207,0.417771',\n",
       "       dtype='<U87'),\n",
       " array('0.252643,0.417771,0.39025,0.225122,0.252643,0.445292,0.362729,0.252643,0.445292,0.362729,0.39025,0.335207,0.335207,0.637941,0.39025',\n",
       "       dtype='<U131'),\n",
       " array('0.582899,0.500335,0.637941,0.555377,0.500335,0.61042,0.555377,0.555377,0.692984,0.445292,0.637941,0.500335,0.665462,0.445292,0.555377,0.555377,0.39025,0.637941,0.142558,0.417771',\n",
       "       dtype='<U177'),\n",
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       "       dtype='<U146'),\n",
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       "       dtype='<U135'),\n",
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       " array('2.371781,1.711271,0.582899,0.748026,0.445292', dtype='<U44'),\n",
       " array('0.665462,0.665462,0.472814,0.83059,0.61042,0.61042,0.61042,1.215888,0.665462,0.555377',\n",
       "       dtype='<U85'),\n",
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       " array('0.445292,0.362729,0.362729,0.445292,0.555377,0.582899,0.445292,0.39025,0.307686,0.115037,0.417771,0.362729,-0.105133,0.445292,0.115037,0.39025,0.39025,0.555377,0.665462,0.720505',\n",
       "       dtype='<U177'),\n",
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       "       dtype='<U88'),\n",
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       "       dtype='<U183'),\n",
       " array('0.362729,0.692984,0.582899,0.692984,0.582899,0.858111,0.83059,1.105803,0.637941,-0.160176',\n",
       "       dtype='<U89'),\n",
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       " array('-1.068377,-0.820686,-0.985814,-1.233505,-1.205984,-1.205984,-1.536239,-1.536239,-1.838973,-1.949058',\n",
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       "       dtype='<U97'),\n",
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       " array('-0.930771,-0.875728,-0.655558,0.720505,0.83059,0.803069,0.720505,0.500335,-0.462909,-0.325303',\n",
       "       dtype='<U93'),\n",
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       " array('0.665462,0.527856,1.27093,1.243409,0.885633,0.83059,0.913154,1.160845,0.775548,0.940675',\n",
       "       dtype='<U87'),\n",
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       "       dtype='<U95'),\n",
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       " array('1.656228,1.711271,1.463579,1.656228,1.353494,1.518622,1.628707,1.133324,0.720505,0.775548',\n",
       "       dtype='<U89'),\n",
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       " array('0.637941,0.803069,0.775548,0.692984,0.748026,-0.215218,-0.90325,-0.710601,-0.68308,-0.985814',\n",
       "       dtype='<U92'),\n",
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       "       dtype='<U97'),\n",
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       "       dtype='<U99'),\n",
       " array('-2.196749,-2.169228,-1.261026,-0.820686,-0.68308,-0.435388,-0.545473,-0.517952,-0.517952,-0.545473',\n",
       "       dtype='<U98'),\n",
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       " array('0.775548,0.968196,0.637941,0.968196,0.885633,0.39025,-0.325303,-0.325303,-0.517952,0.720505',\n",
       "       dtype='<U91'),\n",
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       " array('-0.297782,-0.68308,-0.490431,-0.710601,-0.710601', dtype='<U48'),\n",
       " array('-0.517952,-0.297782,-0.848207,-1.068377,-0.820686,-0.90325,-1.316069,-1.508718,-1.481196,-1.78393',\n",
       "       dtype='<U97'),\n",
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       " array('-2.141707,-1.838973,-1.949058,-1.78393,1.711271', dtype='<U47'),\n",
       " array('1.738792,1.711271,0.885633,0.527856,0.803069,0.445292,0.500335,0.445292,0.555377,0.362729',\n",
       "       dtype='<U89'),\n",
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       " array('1.215888,1.683749,1.215888,1.381015,1.353494', dtype='<U44'),\n",
       " array('1.546143,1.188366,1.243409,1.27093,1.325973,1.243409,1.353494,1.325973,1.27093,1.160845,0.225122,0.032473,0.115037,0.17008,0.004952,0.225122,-0.132654,0.004952,-0.160176,0.059995,-0.077612,-0.242739,-0.187697,0.032473,-0.325303',\n",
       "       dtype='<U227'),\n",
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       "       dtype='<U95'),\n",
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       " array('-1.12342,-1.288547,-1.205984,-1.150941,-1.371111', dtype='<U48'),\n",
       " array('-0.90325,0.803069,0.61042,0.665462,0.527856,0.307686,0.803069,0.885633,0.61042,0.775548',\n",
       "       dtype='<U87'),\n",
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       " array('0.83059,0.83059,0.885633,1.27093,0.83059,0.83059,0.032473,-0.270261,-0.325303,-0.215218',\n",
       "       dtype='<U87'),\n",
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       " array('0.913154,0.858111,0.748026,1.133324,0.803069,0.803069,0.445292,-0.628037,-0.545473,-0.132654',\n",
       "       dtype='<U92'),\n",
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       " array('0.775548,0.665462,0.555377,0.692984,0.720505', dtype='<U44'),\n",
       " array('0.665462,0.445292,-0.05009,-0.105133,-0.242739,-0.215218,-0.160176,-0.462909,-0.490431,-0.435388',\n",
       "       dtype='<U96'),\n",
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       " array('0.858111,0.665462,0.748026,0.362729,0.417771', dtype='<U44'),\n",
       " array('1.436058,1.27093,1.4911,1.243409,1.27093,1.27093,0.500335,0.555377,0.335207,0.61042',\n",
       "       dtype='<U83'),\n",
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       " array('-0.462909,-0.352824,-0.572995,2.096568,2.151611', dtype='<U47'),\n",
       " array('2.316738,2.179132,2.261696,2.206653,2.12409,2.34426,1.931441,2.096568,1.656228,0.335207',\n",
       "       dtype='<U87'),\n",
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       " array('-0.187697,-0.105133,-0.325303,-0.325303,-0.545473', dtype='<U49'),\n",
       " array('-0.407867,-0.325303,-0.352824,-0.435388,0.032473', dtype='<U48'),\n",
       " array('0.280165,0.555377,0.555377,0.445292,0.335207,0.362729,0.720505,0.115037,0.307686,0.472814',\n",
       "       dtype='<U89'),\n",
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       " array('0.803069,0.665462,0.803069,0.665462,0.720505', dtype='<U44'),\n",
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       "       dtype='<U98'),\n",
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       " array('-2.031622,-2.031622,-2.279313,-2.196749,0.720505,0.748026,0.720505,0.940675,1.105803,1.05076',\n",
       "       dtype='<U92'),\n",
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       " array('-0.710601,-0.628037,-0.655558,-0.765643,-0.490431,-0.517952,-0.655558,-0.958292,-0.820686,-0.958292',\n",
       "       dtype='<U99'),\n",
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       "       dtype='<U396'),\n",
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       "       dtype='<U99'),\n",
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       " array('-0.572995,-0.517952,-0.710601,-0.68308,-0.655558,-0.930771,-0.628037,-0.820686,-0.572995,-0.710601,-0.738122,-0.600516,-0.325303,-0.572995,-0.077612,-0.435388,-0.628037,-1.095899,-0.765643,-0.628037',\n",
       "       dtype='<U198'),\n",
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       " array('-1.371111,-1.095899,-1.095899,-1.288547,-0.958292,-1.205984,-0.848207,-1.261026,-0.985814,-1.013335,-0.90325,-1.068377,-0.985814,-0.985814,-0.985814,-1.068377,-0.90325,-1.040856,-0.985814,-1.095899,-0.985814,-1.12342,-0.848207,-1.095899,-1.068377',\n",
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       "       dtype='<U149'),\n",
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       "       dtype='<U88'),\n",
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       "       dtype='<U89'),\n",
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       " array('-0.930771,-1.040856,-0.985814,-0.90325,-0.297782,-0.187697,-0.325303,-0.105133,-0.132654,0.004952',\n",
       "       dtype='<U97'),\n",
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       " array('1.215888,0.637941,0.968196,1.023239,0.692984,1.05076,1.078281,0.968196,0.83059,0.500335,1.325973,0.582899,0.527856,0.335207,0.362729,0.307686,0.527856,1.160845,1.628707,1.05076',\n",
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       "       dtype='<U149'),\n",
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       " array('0.527856,1.188366,1.133324,1.381015,1.325973,1.463579,1.27093,1.711271,1.298452,0.252643',\n",
       "       dtype='<U88'),\n",
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       " array('1.408537,1.628707,1.325973,1.381015,1.4911,1.353494,0.995718,-0.215218,-0.380346,-0.380346',\n",
       "       dtype='<U90'),\n",
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       "       dtype='<U97'),\n",
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       " array('1.298452,1.766313,1.683749,1.656228,1.325973,-0.517952,-0.380346,-0.68308,-0.407867,-0.545473',\n",
       "       dtype='<U93'),\n",
       " array('0.417771,0.637941,0.252643,0.527856,0.362729,0.39025,0.362729,0.225122,0.527856,0.307686',\n",
       "       dtype='<U88'),\n",
       " array('0.555377,0.775548,0.748026,0.775548,0.775548', dtype='<U44'),\n",
       " array('0.775548,-0.628037,-1.12342,-1.095899,-1.040856', dtype='<U47'),\n",
       " array('-1.12342,-1.316069,-1.095899,-1.34359,-1.205984,-1.12342,-1.316069,-1.453675,-1.095899,-0.958292',\n",
       "       dtype='<U96'),\n",
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       " array('-1.12342,-1.316069,-1.205984,0.885633,1.408537,1.711271,1.821356,1.215888,0.995718,1.298452,1.160845,0.940675,-0.572995,-1.095899,-1.095899',\n",
       "       dtype='<U139'),\n",
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       "       dtype='<U148'),\n",
       " array('-0.848207,-1.316069,-1.261026,-0.90325,-0.820686,-0.765643,-0.765643,-0.655558,-0.68308,-0.68308',\n",
       "       dtype='<U96'),\n",
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       " array('0.968196,0.968196,0.940675,1.133324,0.913154,0.940675,0.885633,0.692984,0.39025,-0.820686',\n",
       "       dtype='<U89'),\n",
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       " array('-2.306834,-2.416919,-2.306834,-2.334356,-1.013335', dtype='<U49'),\n",
       " array('0.885633,0.582899,0.775548,0.885633,0.858111,1.848877,1.738792,1.4911,1.381015,1.628707',\n",
       "       dtype='<U87'),\n",
       " array('1.546143,1.4911,1.4911,1.4911,1.546143,1.683749,1.518622,1.463579,1.436058,1.573664',\n",
       "       dtype='<U83'),\n",
       " array('1.546143,1.105803,0.225122,0.225122,0.307686', dtype='<U44'),\n",
       " array('0.417771,0.417771,1.243409,1.27093,1.133324,1.408537,0.968196,1.243409,0.775548,0.858111',\n",
       "       dtype='<U88'),\n",
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       "       dtype='<U89'),\n",
       " array('0.280165,0.17008,0.059995,0.803069,0.417771,0.913154,0.83059,0.968196,0.995718,0.913154,0.748026,0.885633,0.748026,1.078281,0.995718,0.913154,0.803069,0.885633,0.775548,0.940675,0.775548,0.858111,0.885633,0.83059,0.665462,0.748026,0.885633,0.665462,0.995718,0.803069,0.83059,0.83059,0.803069,0.637941,0.885633,0.720505,0.61042,0.692984,0.995718,0.858111,0.913154,0.968196,0.885633,0.858111,0.803069,0.83059,0.885633,1.243409,1.243409,1.27093',\n",
       "       dtype='<U441'),\n",
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       "       dtype='<U177'),\n",
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       " array('1.573664,1.683749,1.628707,1.821356,1.876398,1.738792,1.793834,1.711271,1.215888,1.325973',\n",
       "       dtype='<U89'),\n",
       " array('0.004952,-0.572995,-0.352824,-0.325303,-0.793165,-0.820686,-0.545473,-1.453675,-1.591281,0.527856',\n",
       "       dtype='<U97'),\n",
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       " array('0.417771,0.445292,0.555377,0.142558,0.500335', dtype='<U44'),\n",
       " array('0.472814,0.885633,0.500335,0.417771,0.362729', dtype='<U44'),\n",
       " array('0.692984,0.692984,1.05076,0.885633,0.637941,0.775548,0.417771,0.83059,0.995718,0.83059',\n",
       "       dtype='<U86'),\n",
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       " array('-1.756409,-2.196749,-1.453675,-0.215218,-0.325303,-0.215218,-0.325303,-0.132654,-0.105133,-0.132654',\n",
       "       dtype='<U99'),\n",
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       " array('0.307686,0.17008,0.059995,0.17008,0.115037,0.087516,0.692984,1.133324,1.188366,1.05076',\n",
       "       dtype='<U86'),\n",
       " array('1.381015,1.381015,1.133324,0.968196,-0.077612', dtype='<U45'),\n",
       " array('0.087516,0.004952,0.004952,-0.132654,-0.105133,-0.05009,0.17008,0.197601,0.115037,-0.105133',\n",
       "       dtype='<U91'),\n",
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       " array('1.876398,1.436058,1.628707,1.683749,1.381015,1.298452,-0.187697,-0.325303,-0.325303,-0.352824',\n",
       "       dtype='<U93'),\n",
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       " array('0.225122,-0.077612,0.004952,0.17008,0.17008,0.225122,0.445292,0.225122,1.133324,1.436058',\n",
       "       dtype='<U88'),\n",
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       " array('0.665462,0.83059,0.83059,0.692984,0.720505,0.858111,0.775548,0.665462,0.720505,0.858111',\n",
       "       dtype='<U87'),\n",
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       "       dtype='<U95'),\n",
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       " array('0.665462,1.215888,1.381015,1.133324,1.546143,-0.132654,-0.435388,-0.022569,-0.077612,-0.242739',\n",
       "       dtype='<U94'),\n",
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       " array('1.381015,1.353494,1.381015,1.105803,1.298452', dtype='<U44'),\n",
       " array('1.353494,1.160845,1.105803,0.527856,0.307686', dtype='<U44'),\n",
       " array('0.555377,0.17008,0.362729,-0.407867,-0.242739', dtype='<U45'),\n",
       " array('-0.270261,-0.105133,-0.325303,-0.68308,-0.462909', dtype='<U48'),\n",
       " array('0.720505,0.83059,1.243409,0.885633,1.023239,1.05076,1.188366,1.215888,1.078281,0.885633',\n",
       "       dtype='<U87'),\n",
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       " array('0.335207,0.83059,0.885633,0.775548,0.775548', dtype='<U43'),\n",
       " array('0.995718,0.720505,0.637941,0.527856,0.445292,0.307686,0.225122,0.445292,0.445292,0.445292',\n",
       "       dtype='<U89'),\n",
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       " array('0.500335,1.298452,1.325973,1.215888,0.913154', dtype='<U44'),\n",
       " array('1.353494,1.215888,1.105803,0.61042,0.637941,0.775548,0.720505,0.555377,0.555377,0.555377',\n",
       "       dtype='<U88'),\n",
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       " array('-0.215218,-0.105133,-0.022569,0.004952,0.280165', dtype='<U47'),\n",
       " array('1.986483,1.876398,1.381015,0.445292,0.087516', dtype='<U44'),\n",
       " array('-0.297782,-0.160176,-0.105133,0.032473,0.004952', dtype='<U47'),\n",
       " array('0.500335,0.39025,0.445292,1.931441,2.261696,2.014004,1.931441,1.821356,1.903919,1.986483',\n",
       "       dtype='<U88'),\n",
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       " array('0.225122,0.115037,0.197601,0.115037,0.252643', dtype='<U44'),\n",
       " array('0.115037,0.142558,0.995718,2.316738,2.179132,2.206653,2.206653,2.316738,2.206653,1.408537,0.307686,0.197601,0.004952,1.463579,2.206653,2.234175,2.041526,1.986483,2.179132,2.234175',\n",
       "       dtype='<U179'),\n",
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       " array('0.968196,0.803069,1.105803,0.527856,0.555377,0.445292,0.225122,0.225122,0.307686,0.087516',\n",
       "       dtype='<U89'),\n",
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       "       dtype='<U96'),\n",
       " array('-0.655558,-0.793165,-0.490431,-0.710601,-0.875728,-1.618803,-1.646324,-1.481196,-0.710601,-0.325303',\n",
       "       dtype='<U99'),\n",
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       "       dtype='<U98'),\n",
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       "       dtype='<U87'),\n",
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       "       dtype='<U92'),\n",
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       "       dtype='<U97'),\n",
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       "       dtype='<U89'),\n",
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       "       dtype='<U99'),\n",
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       " array('0.775548,0.665462,0.720505,1.353494,1.298452,1.27093,1.215888,1.215888,1.243409,1.105803',\n",
       "       dtype='<U88'),\n",
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       " array('-0.572995,-0.628037,-0.710601,-0.270261,-0.490431,-0.765643,-0.793165,-0.407867,-0.105133,0.885633',\n",
       "       dtype='<U98'),\n",
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       " array('0.803069,-0.160176,-0.628037,-0.545473,-0.765643', dtype='<U48'),\n",
       " array('-0.765643,0.775548,0.775548,0.968196,0.913154,0.83059,0.940675,0.995718,0.83059,1.27093',\n",
       "       dtype='<U87'),\n",
       " array('0.692984,0.692984,0.225122,0.059995,0.059995,-0.187697,0.637941,0.692984,0.803069,0.83059',\n",
       "       dtype='<U89'),\n",
       " array('0.83059,0.335207,0.335207,0.555377,0.307686', dtype='<U43'),\n",
       " array('0.555377,0.527856,0.555377,0.417771,-0.545473', dtype='<U45'),\n",
       " array('-0.572995,-0.490431,-0.985814,-1.013335,-1.040856,-1.591281,-1.646324,-1.646324,-1.591281,-1.673845',\n",
       "       dtype='<U99'),\n",
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       "       dtype='<U97'),\n",
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       " array('1.766313,1.628707,1.628707,1.711271,1.711271,1.105803,0.059995,0.059995,0.197601,-0.325303',\n",
       "       dtype='<U90'),\n",
       " array('0.059995,0.17008,-0.105133,0.115037,0.087516,0.087516,0.004952,-0.05009,0.115037,0.087516,0.115037,0.004952,-0.022569,0.004952,-0.022569,0.032473,0.142558,0.004952,0.17008,0.004952',\n",
       "       dtype='<U180'),\n",
       " array('1.436058,1.876398,1.821356,1.463579,1.656228,1.215888,1.160845,1.243409,1.243409,0.335207',\n",
       "       dtype='<U89'),\n",
       " array('0.197601,0.197601,0.307686,0.225122,0.17008,0.087516,0.17008,0.115037,0.280165,0.748026,0.197601,0.17008,0.115037,0.115037,0.059995,-0.077612,0.004952,0.445292,0.225122,0.032473,0.115037,0.004952,0.087516,0.115037,-0.05009,0.115037,0.17008,0.059995,0.059995,0.252643',\n",
       "       dtype='<U266'),\n",
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       "       dtype='<U88'),\n",
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       "       dtype='<U132'),\n",
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       " array('0.803069,0.775548,0.335207,0.335207,0.527856,0.280165,-0.077612,-0.545473,-0.022569,-0.352824,-0.517952,-0.242739,-0.655558,-0.572995,-0.545473',\n",
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       "       dtype='<U248'),\n",
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       "       dtype='<U149'),\n",
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       " array('-0.187697,-0.435388,-0.352824,-0.05009,0.115037,0.225122,0.417771,-0.05009,0.087516,0.115037',\n",
       "       dtype='<U92'),\n",
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       " array('0.225122,0.252643,0.472814,0.335207,1.436058', dtype='<U44'),\n",
       " array('1.408537,1.656228,1.601185,1.4911,1.4911,1.766313,1.518622,1.656228,1.408537,1.105803,1.518622,1.436058,1.4911,1.683749,1.573664,1.656228,1.325973,1.436058,0.472814,0.417771',\n",
       "       dtype='<U173'),\n",
       " array('0.17008,-0.077612,0.087516,0.059995,0.225122,0.307686,0.280165,0.115037,0.059995,0.059995,0.197601,0.142558,0.059995,0.087516,0.115037',\n",
       "       dtype='<U134'),\n",
       " array('0.17008,0.059995,0.004952,0.059995,0.803069,1.188366,1.298452,1.27093,1.023239,0.307686',\n",
       "       dtype='<U87'),\n",
       " array('-0.765643,-0.848207,-1.013335,-0.765643,-0.875728,-0.848207,-0.793165,-0.820686,-0.68308,-0.765643',\n",
       "       dtype='<U98'),\n",
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       " array('1.711271,1.711271,-0.187697,-0.215218,-0.490431,-0.655558,-0.545473,0.307686,0.885633,0.692984',\n",
       "       dtype='<U94'),\n",
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       " array('0.665462,0.692984,0.748026,0.803069,0.748026', dtype='<U44'),\n",
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       "       dtype='<U143'),\n",
       " array('-1.426154,-1.316069,-1.371111,-1.591281,-1.316069,-1.481196,-1.56376,-1.701366,-1.646324,-1.536239',\n",
       "       dtype='<U98'),\n",
       " array('-1.646324,-1.591281,-1.371111,-1.095899,-1.34359,-0.545473,0.885633,0.665462,0.803069,0.362729,0.445292,0.692984,0.803069,0.775548,0.17008',\n",
       "       dtype='<U138'),\n",
       " array('-0.270261,-0.160176,-0.352824,-0.215218,-0.187697,-0.132654,-0.325303,-0.545473,0.004952,-0.215218',\n",
       "       dtype='<U98'),\n",
       " array('-0.517952,-0.242739,-0.628037,-0.462909,-0.765643,-0.132654,-0.490431,0.913154,1.105803,1.133324,0.775548,0.803069,-0.628037,-0.68308,-0.655558',\n",
       "       dtype='<U143'),\n",
       " array('-0.820686,-0.655558,-0.793165,-1.233505,-1.453675', dtype='<U49'),\n",
       " array('-1.34359,-1.288547,1.325973,1.353494,0.885633', dtype='<U45'),\n",
       " array('0.995718,1.160845,0.720505,0.17008,-0.077612', dtype='<U44'),\n",
       " array('-0.270261,-0.435388,-0.325303,-0.325303,-0.352824,-0.325303,-0.270261,-0.325303,-0.545473,-0.352824',\n",
       "       dtype='<U99'),\n",
       " array('-0.242739,-0.380346,-0.105133,-0.435388,-0.325303,-0.105133,-0.187697,-0.105133,-0.517952,-0.848207,-0.215218,-0.187697,-0.325303,0.335207,0.555377',\n",
       "       dtype='<U147'),\n",
       " array('0.555377,0.692984,0.61042,0.940675,0.803069', dtype='<U43'),\n",
       " array('0.665462,1.243409,0.885633,0.665462,0.39025,-1.178462,-1.34359,-1.34359,-1.398633,-1.288547',\n",
       "       dtype='<U91'),\n",
       " array('-1.371111,-1.426154,0.17008,0.665462,0.637941', dtype='<U45'),\n",
       " array('0.775548,0.748026,0.885633,0.527856,0.858111,0.775548,1.298452,1.353494,1.27093,1.215888',\n",
       "       dtype='<U88'),\n",
       " array('1.381015,1.215888,0.692984,0.032473,0.115037', dtype='<U44'),\n",
       " array('0.197601,0.225122,0.445292,0.692984,1.078281', dtype='<U44'),\n",
       " array('1.436058,1.27093,1.188366,1.05076,1.408537,1.325973,1.188366,1.27093,1.215888,1.188366',\n",
       "       dtype='<U86'),\n",
       " array('1.05076,-0.160176,-1.233505,-1.12342,-0.875728', dtype='<U46'),\n",
       " array('0.280165,0.335207,0.059995,0.720505,0.555377', dtype='<U44'),\n",
       " array('0.885633,0.582899,0.445292,0.61042,0.555377', dtype='<U43'),\n",
       " array('0.665462,0.720505,0.83059,0.913154,0.748026', dtype='<U43'),\n",
       " array('0.692984,0.307686,-0.325303,-0.848207,-0.793165,-0.930771,-0.985814,-0.848207,-0.985814,-1.040856',\n",
       "       dtype='<U97'),\n",
       " array('-1.013335,-0.875728,-1.205984,-0.655558,-0.875728', dtype='<U49'),\n",
       " array('-0.875728,-0.930771,-0.793165,-0.958292,-0.985814,-1.013335,-0.958292,-1.095899,-0.958292,-1.040856',\n",
       "       dtype='<U99'),\n",
       " array('-1.095899,-0.958292,-1.013335,-1.068377,-0.628037,-0.820686,-0.875728,-0.930771,-0.930771,-1.150941,-0.985814,-1.12342,-1.56376,-1.673845,-1.866494,-1.756409,-1.508718,-1.78393,-1.756409,-1.838973',\n",
       "       dtype='<U196'),\n",
       " array('-1.756409,-1.949058,-1.728888,-1.78393,-0.765643,-0.215218,-0.242739,-0.187697,-0.435388,-0.435388',\n",
       "       dtype='<U98'),\n",
       " array('-0.215218,-0.270261,-0.187697,-0.325303,-0.325303', dtype='<U49'),\n",
       " array('-0.270261,-0.160176,-0.215218,-0.325303,0.555377,1.105803,0.995718,0.362729,-0.462909,-0.517952',\n",
       "       dtype='<U95'),\n",
       " array('-0.407867,-0.765643,-0.90325,-0.710601,-0.765643,-0.600516,-0.958292,-0.738122,-0.68308,-0.985814',\n",
       "       dtype='<U97'),\n",
       " array('-0.710601,-0.765643,-0.655558,-0.765643,-0.655558,-0.765643,-0.90325,-0.325303,-0.215218,-0.215218',\n",
       "       dtype='<U98'),\n",
       " array('-0.270261,-0.187697,-0.215218,-0.242739,-0.105133', dtype='<U49'),\n",
       " array('0.335207,0.472814,0.39025,0.555377,0.115037', dtype='<U43'),\n",
       " array('0.555377,0.803069,0.775548,0.748026,0.858111', dtype='<U44'),\n",
       " array('0.858111,0.803069,0.913154,0.858111,1.105803', dtype='<U44'),\n",
       " array('1.243409,1.243409,0.885633,1.325973,0.885633,0.940675,0.775548,0.252643,0.307686,0.39025,-0.105133,0.17008,0.059995,0.307686,-0.077612',\n",
       "       dtype='<U134'),\n",
       " array('0.115037,-0.160176,-0.215218,-0.187697,0.032473,0.115037,-0.105133,0.087516,0.115037,0.115037,-0.105133,-0.215218,0.004952,-0.105133,-0.105133',\n",
       "       dtype='<U142'),\n",
       " array('-0.215218,-0.187697,-0.793165,-0.930771,-0.90325,-0.848207,-0.930771,-1.040856,-0.930771,-0.90325',\n",
       "       dtype='<U97'),\n",
       " array('-0.985814,-0.930771,-0.930771,-1.205984,-1.12342', dtype='<U48'),\n",
       " array('-0.985814,-1.068377,-1.095899,-0.90325,-1.150941', dtype='<U48'),\n",
       " array('-0.738122,-0.710601,-0.655558,-0.793165,-0.490431,-0.793165,-0.655558,-0.793165,-1.288547,-1.068377,-1.095899,-0.517952,-0.655558,-0.68308,0.500335',\n",
       "       dtype='<U147'),\n",
       " array('1.215888,1.298452,1.133324,1.05076,0.995718,1.023239,1.215888,1.133324,1.078281,1.05076',\n",
       "       dtype='<U87'),\n",
       " array('1.05076,0.995718,1.023239,1.133324,0.885633', dtype='<U43'),\n",
       " array('1.436058,1.05076,0.968196,1.078281,1.133324,0.968196,0.968196,1.215888,1.325973,1.105803',\n",
       "       dtype='<U88'),\n",
       " array('0.885633,-0.132654,-0.90325,-0.793165,-0.985814', dtype='<U47'),\n",
       " array('-0.738122,-0.765643,-0.793165,-0.820686,-0.572995', dtype='<U49'),\n",
       " array('1.518622,1.573664,0.968196,-0.105133,-0.490431', dtype='<U46'),\n",
       " array('-0.270261,-0.435388,-0.572995,-0.875728,-1.040856', dtype='<U49'),\n",
       " array('-0.930771,-1.068377,-1.068377,-1.371111,-1.646324,-1.78393,-1.646324,-1.591281,-1.756409,-1.646324',\n",
       "       dtype='<U98'),\n",
       " array('-1.618803,-1.756409,-1.838973,-1.646324,-1.673845,-1.838973,-1.728888,-1.536239,-1.508718,-1.756409',\n",
       "       dtype='<U99'),\n",
       " array('-1.673845,-1.618803,-1.756409,-1.921537,-1.78393,-1.756409,-1.673845,-1.453675,-1.095899,0.940675',\n",
       "       dtype='<U97'),\n",
       " array('1.078281,0.803069,0.995718,0.803069,0.307686', dtype='<U44'),\n",
       " array('-0.68308,-0.765643,-0.765643,-0.848207,-0.765643', dtype='<U48'),\n",
       " array('-0.848207,-0.930771,-0.930771,-1.068377,-0.875728,-0.628037,-0.738122,0.665462,0.555377,0.500335',\n",
       "       dtype='<U96'),\n",
       " array('1.023239,0.748026,0.720505,0.748026,0.748026', dtype='<U44'),\n",
       " array('0.858111,1.436058,1.325973,1.27093,1.381015,1.546143,1.188366,0.775548,1.160845,1.243409',\n",
       "       dtype='<U88'),\n",
       " array('1.05076,-0.325303,-0.462909,-0.628037,-0.600516', dtype='<U47'),\n",
       " array('-0.68308,-0.765643,-0.793165,-1.013335,-0.628037', dtype='<U48'),\n",
       " array('1.105803,1.27093,1.325973,1.601185,1.27093,1.518622,1.27093,0.803069,-0.022569,0.032473',\n",
       "       dtype='<U87'),\n",
       " array('0.087516,0.087516,-0.077612,-0.215218,0.692984', dtype='<U46'),\n",
       " array('0.83059,0.692984,0.665462,0.858111,0.748026,0.665462,0.445292,0.362729,0.17008,0.115037',\n",
       "       dtype='<U87'),\n",
       " array('0.17008,-0.05009,0.115037,0.197601,-0.05009', dtype='<U43'),\n",
       " array('0.004952,-0.077612,0.335207,1.325973,1.381015,0.803069,0.940675,0.803069,0.004952,-0.215218',\n",
       "       dtype='<U91'),\n",
       " array('-0.517952,1.325973,1.436058,1.325973,1.436058', dtype='<U45'),\n",
       " array('1.628707,1.381015,1.436058,1.243409,1.105803,1.215888,1.105803,0.582899,-0.655558,-0.930771',\n",
       "       dtype='<U91'),\n",
       " array('-1.013335,-0.820686,-0.820686,-0.655558,-0.958292', dtype='<U49'),\n",
       " array('-1.205984,-1.261026,-1.205984,-1.233505,-1.205984,1.325973,2.12409,2.179132,2.316738,2.096568',\n",
       "       dtype='<U93'),\n",
       " array('2.096568,2.34426,1.986483,2.041526,0.748026,-0.875728,0.17008,2.096568,2.151611,2.096568',\n",
       "       dtype='<U88'),\n",
       " array('1.821356,1.628707,0.775548,1.023239,0.803069', dtype='<U44'),\n",
       " array('0.83059,0.913154,0.913154,0.885633,0.913154,1.188366,0.775548,1.05076,0.803069,0.885633',\n",
       "       dtype='<U87'),\n",
       " array('0.940675,0.665462,0.472814,-0.242739,-0.655558', dtype='<U46'),\n",
       " array('-0.545473,-0.462909,-0.435388,-0.600516,0.500335,0.692984,0.61042,-0.105133,-0.517952,-0.793165,-0.490431,-0.325303,-0.572995,-0.352824,-0.517952,-0.545473,-0.435388,-0.490431,-0.462909,-0.270261,-0.517952,-0.517952,-0.462909,-0.545473,-0.490431,-0.517952,-0.435388,-0.490431,-0.490431,-0.68308',\n",
       "       dtype='<U294'),\n",
       " array('-0.68308,-0.710601,-0.600516,-0.380346,-0.242739,0.335207,0.445292,0.555377,0.445292,0.748026',\n",
       "       dtype='<U93'),\n",
       " array('0.555377,0.555377,0.720505,0.555377,0.637941', dtype='<U44'),\n",
       " array('0.115037,-0.105133,-0.105133,-0.160176,-0.022569,-0.270261,-0.132654,0.004952,-0.132654,-0.187697,-0.132654,-0.05009,-0.132654,-0.242739,0.004952,-0.242739,-0.022569,-0.215218,-0.132654,-0.077612,-0.160176,-0.270261,-0.380346,-0.077612,0.004952',\n",
       "       dtype='<U244'),\n",
       " array('-0.132654,-0.077612,-0.187697,-0.380346,-0.325303', dtype='<U49'),\n",
       " array('-0.105133,-0.462909,0.17008,0.39025,0.637941,0.362729,0.059995,0.417771,0.417771,0.004952',\n",
       "       dtype='<U89'),\n",
       " array('0.417771,0.445292,0.500335,0.555377,0.445292', dtype='<U44'),\n",
       " array('0.362729,0.555377,0.335207,0.500335,0.472814,0.362729,0.665462,0.940675,0.995718,1.188366',\n",
       "       dtype='<U89'),\n",
       " array('1.160845,0.995718,0.637941,-0.187697,-0.187697,-0.325303,-0.270261,-1.12342,-1.150941,-1.068377',\n",
       "       dtype='<U95'),\n",
       " array('-1.205984,-1.013335,-1.316069,-1.095899,-1.178462', dtype='<U49'),\n",
       " array('-1.205984,-1.040856,-1.233505,-1.34359,-1.398633,-1.316069,-1.756409,-1.536239,-1.618803,-1.618803',\n",
       "       dtype='<U98'),\n",
       " array('-1.756409,-1.78393,-1.426154,-1.205984,-1.205984,-1.261026,-1.288547,-1.12342,-1.426154,-1.536239',\n",
       "       dtype='<U97'),\n",
       " array('-1.536239,-1.205984,-1.591281,-1.591281,-1.56376', dtype='<U48'),\n",
       " array('-1.591281,-1.673845,-1.646324,-1.34359,-1.095899,-1.150941,-1.205984,-1.013335,-1.068377,-1.205984,-1.646324,-1.205984,-0.820686,-0.985814,-0.90325,-0.68308,0.472814,0.335207,0.445292,0.335207',\n",
       "       dtype='<U192'),\n",
       " array('1.105803,1.105803,0.885633,1.133324,1.298452', dtype='<U44'),\n",
       " array('1.353494,0.83059,1.05076,1.105803,1.188366', dtype='<U42'),\n",
       " array('0.968196,1.215888,0.83059,0.995718,1.105803,0.555377,0.582899,0.555377,0.775548,0.775548,0.39025,-0.490431,-0.462909,-0.628037,-0.628037',\n",
       "       dtype='<U136'),\n",
       " array('-0.765643,-0.765643,-0.875728,-0.875728,-0.738122,-0.077612,0.335207,0.445292,0.417771,0.335207',\n",
       "       dtype='<U95'),\n",
       " array('0.362729,0.61042,0.335207,0.527856,0.803069,0.61042,0.225122,0.582899,0.032473,-0.545473,-0.517952,-0.490431,-0.352824,-0.655558,-0.462909',\n",
       "       dtype='<U138'),\n",
       " array('-0.435388,-0.490431,-0.352824,-0.435388,-0.517952,-0.517952,-0.297782,-0.407867,-0.242739,-0.270261',\n",
       "       dtype='<U99'),\n",
       " array('-0.352824,-0.380346,-0.572995,-0.545473,-0.462909', dtype='<U49'),\n",
       " ...]"
      ]
     },
     "execution_count": 3,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "signal_group"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "def get_refloc_of_methysite_in_motif(seqstr, motifset, methyloc_in_motif=0):\n",
    "    \"\"\"\n",
    "\n",
    "    :param seqstr:\n",
    "    :param motifset:\n",
    "    :param methyloc_in_motif: 0-based\n",
    "    :return:\n",
    "    \"\"\"\n",
    "    motifset = set(motifset)\n",
    "    strlen = len(seqstr)\n",
    "    motiflen = len(list(motifset)[0])\n",
    "    sites = []\n",
    "    for i in range(0, strlen - motiflen + 1):\n",
    "        if seqstr[i : i + motiflen] in motifset:\n",
    "            sites.append(i + methyloc_in_motif)\n",
    "    return sites"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "387e0763-f673-4419-901c-e72b161dc582\n",
      "Chr12\n",
      "1025460\n",
      "CATGTTCTCAGTATTCCAAAATTCCAATTC\n",
      "496,505,494,509,497;505,494,499,506,475,475,479,479,469,473;470,464,479,476,474;474,479,476,487,450,484,474,468,464,464;444,436,469,451,460,460,455,446,444,447;438,462,508,495,500,501,433,409,416,431;491,476,483,499,487;465,471,490,498,481,483,501,499,510,509;517,505,487,515,503,499,524,513,510,511,497,512,512,501,486;504,468,460,459,453,451,477,479,479,459,477,506,536,543,539;554,540,535,544,544,537,535,559,526,500;501,503,487,515,503,502,503,471,430,440;436,444,434,452,441,447,448,423,449,442,433,445,447,430,419;427,423,439,477,524;503,529,521,527,517,487,506,518,504,485;411,430,421,427,431,430,410,428,476,486;509,502,501,502,497,489,504,502,499,521;515,520,510,522,517,518,520,520,515,510;500,507,503,502,490;502,505,498,496,512,503,507,503,504,508;482,481,484,482,476;478,469,482,474,473,478,479,446,454,459;437,429,439,432,431;428,404,417,407,403;412,475,504,481,508,499,497,512,523,523;526,534,535,517,492;509,511,509,503,509;496,507,509,500,514,509,452,447,439,434;431,446,449,439,437,458,453,452,446,442;436,432,445,411,415,407,413,392,402,399\n",
      "15,16,23,24,29,\n",
      "\n",
      "-1.0,-1.0,-1.0,-1.0,-1.0,\n",
      "\n",
      "1e-06,2.4e-05,0.0,1e-06,0.0,\n",
      "\n",
      "1e-06,2.4e-05,0.0,1e-06,0.0,\n",
      "\n",
      "0,0,0,0,0,\n",
      "\n",
      "60\n",
      "0,0,3,3,0,\n",
      "\n"
     ]
    }
   ],
   "source": [
    "input='/home/xiaoyifu/data/plant/rice_ribenqing/train/train.demo.tsv'\n",
    "import numpy as np\n",
    "with open(input,'r') as rb:\n",
    "    for line in rb:\n",
    "        words=line.strip().split('\\t')\n",
    "        seq=words[3]\n",
    "        sites=get_refloc_of_methysite_in_motif(seq,'CHH')\n",
    "        sig=words[4].split(';')\n",
    "        pred_pos=[int(x)for x in words[5].split(',')]\n",
    "        pred_dorado=words[6].split(',')\n",
    "        pred_deepsignal=words[7].split(',')\n",
    "        pred_mean=words[8].split(',')\n",
    "        pred_label=words[9].split(',')\n",
    "        mapq=words[10].split(',')\n",
    "        bis_label=[int(float(x)) for x in words[15].split(',')]\n",
    "        index=-1\n",
    "        for i in sites:\n",
    "            if i not in pred_pos:\n",
    "                continue\n",
    "            index=i\n",
    "            break\n",
    "        if index==-1:\n",
    "            continue\n",
    "        if index+15>=len(seq) or index<15:\n",
    "            continue\n",
    "        print(words[0])\n",
    "        print(words[1])\n",
    "        print(words[2])\n",
    "        print(seq[index-15:index+15])\n",
    "        print(';'.join(sig[index-15:index+15]))\n",
    "        pos=[]\n",
    "        for i in range(len(pred_pos)):\n",
    "            if pred_pos[i]<=index+15 and pred_pos[i]>=index-15:\n",
    "                print(pred_pos[i]-(index-15),end=',')\n",
    "                pos.append(i)\n",
    "        print('\\n')\n",
    "        #print(','.join(pred_pos[:3]))\n",
    "        for i in pos:\n",
    "            print(pred_dorado[i],end=',')\n",
    "        print('\\n')\n",
    "        #print(','.join(pred_dorado[:3]))\n",
    "        #print(','.join(pred_deepsignal[:3]))\n",
    "        for i in pos:\n",
    "            print(pred_deepsignal[i],end=',')\n",
    "        print('\\n')\n",
    "        #print(','.join(pred_mean[:3]))\n",
    "        for i in pos:\n",
    "            print(pred_mean[i],end=',')\n",
    "        print('\\n')\n",
    "        #print(','.join(pred_label[:3]))\n",
    "        for i in pos:\n",
    "            print(pred_label[i],end=',')\n",
    "        print('\\n')\n",
    "        print(mapq[0])\n",
    "        for i in pos:\n",
    "            print(bis_label[i],end=',')\n",
    "        print('\\n')\n",
    "        break"
   ]
  }
 ],
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